Assistant Professor
Department of Computational Sciences
School of Basic and Applied Sciences
| Degree | University / Institute | Year |
| Ph.D. (Theoretical Chemistry) | Indian Institute of Technology, Kharagpur | 2009 |
| M.Sc. (Physical Chemistry) | University of Calcutta | 2001 |
| B.Sc. (Chem. Hons) | University of Calcutta | 1999 |
| University/Institute | Position | Period | Remarks |
|
Department of Computational Sciences Central University of Punjab, Bathinda |
HOD (O) |
2019 (Dec) – Current |
Teaching, Research and Development |
|
Department of Computational Sciences Central University of Punjab, Bathinda |
Assistant Professor | 2016 (Nov) – Current | Teaching, Research and Development |
|
Center for Condensed Matter Theory, Department of Physics, Indian Institute of Science, Bangalore, India |
DST Young Scientist | 2014 (Nov) — 2016 (July) | Research and Development |
|
Department of Chemistry, Colorado State University, Fort Collins, CO, USA. |
Post-Doctoral Fellow (with Prof. Branka M Ladanyi) | 2011 (July) — 2014 (Feb) | Research and Development |
|
Department of Bioengineering, QB3 Institute, University of California, Berkeley, CA, USA. |
Post-Doctoral Scholar Employee (with Prof. Teresa Head Gordon) | 2010 (Mar) — 2011 (June) | Research and Development |
| LRSM, University of Pennsylvania, Philadelphia, PA, USA. | Post-Doctoral Researcher (with Prof. Michael L Klein) | 2009 (Mar) — 2010 (Mar) | Research and Development |
Administrative Experience
1. Head of the Department (O), Department of Computational Sciences, Period: 2019 (December) – Current
2. Member of the Board of Studies, Department of Computational Sciences, Department of Mathematics and Statistics, Department of Physical Sciences, Department of Animal Sciences Central University of Punjab, Bathinda.
Protein Modelling & Inhibitor Design
Membrane Biophysics & Ion Channels
Ionic Liquids: Capacitive Energy Storage, Biomass Dissolution
Graphene / Graphene Oxide: Electronics, Molecular Separation
Computational Soft Condensed Matter Physics
Open Positions
Potential Ph.D. aspirants can enquire for positions by sending their CV with one page proposal at sudip.chakraborty@cup.edu.in.
My research group activities; please visit: https://sudipcupb.wixsite.com/home
1. Swelling and Dissolution of Lignocellulosic Biomass in Ionic Liquids: Computer Simulation Studies, SERB (DST-India), PI: Dr. Sudip Chakraborty
2. Dissolution of Cellulose In Ionic Liquid / Water Mixed Solvent Systems: Computer Simulation Studies, UGC-FRPS, PI: Dr. Sudip Chakraborty
3. Structure and Dynamics of Water and Ionic Liquids Near Model Sugars, CUPB – RSM, PI: Dr. Sudip Chakraborty
Member of the American Chemical Society (Annual)
1. Prof. Kamini Kr. De Medal in B.Sc (Hons)—1999 (College First)
2. Namita Chakrabarti Memorial Medal for securing highest marks in Chemistry Honours.
3. NET (CSIR—Junior Research Fellowship—2002)
4. Department of Science and Technology (DST), Govt of India Fast Track Project for Young Scientists (Reg. No.: CS – 107/2013).
5. Research Award 1 (Certificate of Commendation for Research Publication with Impact Factor more than 10 in the year 2016-17 on February 28, 2018) @ Central University of Punjab (The award include research grant of INR 20,000/-)
6. Research Award 2 (Certificate of Commendation for Research Publication with Cumulative Impact Factor more than 15 in the year 2016-17 on February 28, 2018) @ Central University of Punjab (The award include research grant of INR 20,000/-)
7. Best Teacher Award for the year 2017-18 on February, 2018 @ Central University of Punjab (Cash Prize of INR 2000/-)
Articles
1. Confined Water: Structure, Dynamics and Thermodynamics S. Chakraborty, Hemant Kumar, C. Dasgupta, and P. K. Maiti, Acc. Chem. Res. 2017, 50, 2139. Impact Factor: 20.268
2. Molecular Mechanism of Water Permeation in Helium Impermeable Graphene and Graphene Oxide Membrane N. Raghav, S. Chakraborty, P. K. Maiti, Physical Chemistry Chemical Physics 2015, 17, 20557. Impact Factor: 4.493
3. Differential Dynamics of the Serotonin1A Receptor in Membrane Bilayers of Varying Cholesterol Content Revealed by All Atom Molecular Dynamics Simulation S. M. Patra*, S. Chakraborty*, G. Shahane, X. Prasanna, D. Sengupta, P. K. Maiti, A. Chattopadhyay, Mol. Membr. Biol. 2015, 32, 127. Impact Factor: 2.539 * Equal Contribution
4. Secondary Structure Specific Entropy Change of a Partially Unfolded Protein Molecule S. K. Sinha, S. Chakraborty and S. Bandyopadhyay, Langmuir 2010, 26, 9911. Impact Factor: 4.457
5. Effect of Unfolding on the Thickness of the Hydration Layer of a Protein S. K. Sinha, S. Chakraborty and S. Bandyopadhyay, Ind. J. Phys. 2009, 83, 49. Impact Factor: 1.785
6. Dynamics of Water in the Hydration Layer of a Partially Unfolded Structure of the Protein HP-36. S. Chakraborty and S. Bandyopadhyay, J. Phys. Chem. B 2008, 112, 6500. Impact Factor: 3.302
7. Thickness of the Hydration Layer of a Protein from Molecular Dynamics Simulation S. K. Sinha, S. Chakraborty and S. Bandyopadhyay, J. Phys. Chem. B 2008, 112, 8203. Impact Factor: 3.302
8. Low-Frequency Vibrational Spectrum of Water in the Hydration Layer of a Protein: A Molecular Dynamics Simulation Study S. Chakraborty, S. K. Sinha and S. Bandyopadhyay, J. Phys. Chem. B 2007, 111, 13626. Impact Factor: 3.302
9. Correlation between the Dynamics of Hydrogen Bonds and the Local Density Reorganization in the Protein Hydration Layer S. Chakraborty and S. Bandyopadhyay, J. Phys. Chem. B 2007, 111, 7626. Impact Factor: 3.302
10. Exploration of the Secondary Structure Specific Differential Solvation Dynamics between the Native and Molten Globule States of the Protein HP-36. S. Bandyopadhyay, S. Chakraborty and B. Bagchi, J. Phys. Chem. B 2006, 110, 20629. Impact Factor: 3.302
11. Coupling between Hydration Layer Dynamics and Unfolding Kinetics of HP-36 (This article was selected for publication in Virtual Journal of Biological Physics Research 12(5) 2006). S. Bandyopadhyay, S. Chakraborty and B. Bagchi, J. Chem. Phys. 2006, 125, 084912. Impact Factor: 3.017
12. Sensitivity of Hydrogen bond Lifetime Dynamics to the Presence of Ethanol at the Interface of a Phospholipid Bilayer J. Chanda, S. Chakraborty and S. Bandyopadhyay, J. Phys. Chem. B 2006, 110, 3791. Impact Factor: 3.302
13. Secondary Structure Sensitivity of Hydrogen Bond Lifetime Dynamics in the Protein Hydration Layer S. Bandyopadhyay, S. Chakraborty and B. Bagchi, J. Am. Chem. Soc. 2005, 127, 16660. Impact Factor: 13.858
14. Sensitivity of Polar Solvation Dynamics to the Secondary Structures of Aqueous Proteins and the Role of Surface Exposure of the Probe S. Bandyopadhyay, S. Chakraborty, S. Balasubramanian and B. Bagchi, J. Am. Chem. Soc. 2005, 127, 4071. Impact Factor: 13.858
15. Monolayer of Aerosol-OT Surfactants Adsorbed at the Air/Water Interface: An Atomistic Computer Simulation Study J. Chanda, S. Chakraborty and S. Bandyopadhyay, J. Phys. Chem. B 2005, 109, 471. Impact Factor: 3.302
16. Bimodal Water Dynamics at the Surface of Micelles and Proteins. S. Balasubramanian, S. Chakraborty, S. Bandyopadhyay, S. Pal, B. Bagchi, Ultrafast Phenomena XIV (Proceedings of the 14th International Conference) Eds. T. Kobayashi, T. Okada, T. Kobayashi, K. A. Nelson, S. De Silvestri, Springer Series in Chemical Physics, 2005, v.79.
17. Atomistic Simulation Study of the Coupled Motion of Amino Acid Residues and Water Molecules Around Protein HP-36 : Fluctuations at and Around the Active Sites. S. Bandyopadhyay, S. Chakraborty, S. Balasubramanian, S. Pal and B. Bagchi, J. Phys. Chem. B 2004, 108, 12608. Impact Factor: 3.302
Book Chapters
1. Water Dynamics at the Surface of Proteins and Micelles: Understanding the Fast and the Slow Components S. Pal, S. Chakraborty, S. M. Bhattacharyya, S. Bandyopadhyay, S. Balasubramanian and B. Bagchi, in Water Properties of Food, Pharmaceutical, and Biological Materials, Ed. M. D. P. Buera, J. Welti-Chanes, P. J. Lillford and H. R. Corti, Taylor and Francis Publisher, 2006, p.11-37.
Ph.D. Students
1. Anupama Sharma (CSIR NET JRF)
Project Assistant (Current Place)
1. Vishal Kumar (IIIT Hyderabad)
2. Amit Singh (University of Graz, Austria)
M.Sc. Students (Current Place)
2021
Deepak James (Michigan State University), Aishwarya Dharan, Chandraniv Dey, Sujith S, Amulya Gadala, Omega Jena
2020
Akhil Sajan (Michigan State University), Hariom Shukla, Rinto Thomas (NCL Pune), Ashish Kandpal (ICT Bhubneswar), Harpreet Gill (PGT)
2019
Nikita (DU, South Campus), Drishtee Barua, Uddalok Jana (NII, Delhi), Akash Phogat (Adhyan Institute, Delhi)
2018
Mywish Anand (IPR, Gandhinagar), Swati Saha (University of Louisville), Preeti (Pondicherry University), Usha
2017
Komal Yadav (NISER, Bhubneswar), Richa, Kamni
1. Two Days Technical and Hands-on Workshop on Molecular Modeling and Design, Bioinformatics.
2. Career Opportunities and Related Skill Set for High Performance Computing.
3. Bioinformatics & Chemical Biology Webinar Series.
2. Chakraborty, S. Invited Lecture “Polarizable Force Field Development for Ionic Liquids” in Inhouse Symposium held at Department of Physics, IISc Bangalore, November 21 – 22, 2014.
Total Impact Factor of Publications: 91
Total Citations: 869
h-index: 16
i10-index: 17